像素标注分析

通常是目标导向型的分析方式


一种常见连接组学数据分析方式是目的导向的,研究人员基于连接组学像素化标注结果的进行形态学分析,不需要对所有数据完成标注,只需要对感兴趣的区域和内容进行重点标注即可。标注所得的体式重构数据一方面提供了前所未有的高分辨细节,另一方面还能够从多个角度展示对应的神经结构,因此使得研究人员能够真正“身临其境”地深入神经系统内部探索其结构奥秘。这种分析方式可以常用于亚细胞级的细胞器研究,例如小鼠视感受器内段线粒体的对称性分布1以及斑马鱼视觉感受器线粒体的昼夜动态变化2;也可以用于发现新的细胞间神经环路,例如灵长类视网膜用于非成像视觉的色觉神经环路3以及灵长类视网膜上用于边缘检测的短视锥神经环路4;甚至用于系统级神经科学规律的验证,例如在视网膜5、海马体6和新皮层7的数据均对突触形成和物理距离之间的相关性提出了质疑。这种分析方式对于数据量要求不高,但是对数据标注的可靠性以及研究人员的领域知识有很强的依赖,整体分析难度不高,因此相比于分析工具来说,有效地对形态结果进行可视化展示更加重要,通常数据标注软件自带的可视化工具就能满足需求,除此以外Blender8也是常用于此类研究的可视化渲染工具。


  1. Ingrid P Meschede, Nicholas C Ovenden, Miguel C Seabra, Clare E Futter, Marcela Votruba, Michael E Cheetham, and Thomas Burgoyne. Symmetric arrangement of mitochondria: plasma membrane contacts between adjacent photoreceptor cells regulated by opa1. Proceedings of the National Academy of Sciences, 117(27):15684–15693, 2020. 

  2. Michelle M Giarmarco, Daniel C Brock, Brian M Robbings, Whitney M Cleghorn, Kristine A Tsantilas, Kellie C Kuch, William Ge, Kaitlyn M Rutter, Edward D Parker, James B Hurley, and others. Daily mitochondrial dynamics in cone photoreceptors. Proceedings of the National Academy of Sciences, 117(46):28816–28827, 2020. 

  3. Sara S Patterson, James A Kuchenbecker, James R Anderson, Maureen Neitz, and Jay Neitz. A color vision circuit for non-image-forming vision in the primate retina. Current Biology, 30(7):1269–1274, 2020. 

  4. Sara S Patterson, James A Kuchenbecker, James R Anderson, Andrea S Bordt, David W Marshak, Maureen Neitz, and Jay Neitz. An s-cone circuit for edge detection in the primate retina. Scientific Reports, 9(1):1–11, 2019. 

  5. Kevin L Briggman, Moritz Helmstaedter, and Winfried Denk. Wiring specificity in the direction-selectivity circuit of the retina. Nature, 471(7337):183–188, 2011. 

  6. Yuriy Mishchenko, Tao Hu, Josef Spacek, John Mendenhall, Kristen M Harris, and Dmitri B Chklovskii. Ultrastructural analysis of hippocampal neuropil from the connectomics perspective. Neuron, 67(6):1009–1020, 2010. 

  7. Narayanan Kasthuri, Kenneth Jeffrey Hayworth, Daniel Raimund Berger, Richard Lee Schalek, José Angel Conchello, Seymour Knowles-Barley, Dongil Lee, Amelio Vázquez-Reina, Verena Kaynig, Thouis Raymond Jones, and others. Saturated reconstruction of a volume of neocortex. Cell, 162(3):648–661, 2015. 

  8. Blender Online Community. Blender—a 3d modelling and rendering package. Blender Foundation, 2018.